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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0161s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 34318 Da PI: 6.4252 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.7e-20 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+++l+g Kalax.0161s0009.1.p 35 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 84 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.13E-32 | 34 | 94 | No hit | No description |
PROSITE profile | PS51032 | 22.55 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-36 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-21 | 35 | 93 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-13 | 35 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 35 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDNCGSNSRK TSISNKPWRK GPTRGKGGPL NSSCEYRGVR QRTWGKWVAE IREPKKRTRL 60 WLGSFATAEE AAMAYDEAAR RLYGPEAYLN LPHLQMQPTN DPNSTTAFPS KSHNRFRWFP 120 SKNFISMFPS CGLLNLNAQP SVHLIHQRLE ELKKNNSTKP ANNYSSSVSK TEELHTKSSI 180 QTHEDGDTMS ASRDGQQLLP SASLSDNQPH KQEQKPQIDL HEFLQQLGIL KDEEINQQEQ 240 YMEGMSSYTN ENLELLVQND SLADGKSFNW ESLIEYQSAG ENSDACFQFS DTHEDILFPN 300 TI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 36 | 92 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007028832.1 | 1e-100 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9SVX5 | 2e-77 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A061F476 | 1e-100 | A0A061F476_THECC; Integrase-type DNA-binding superfamily protein | ||||
STRING | VIT_08s0007g08150.t01 | 4e-96 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-66 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0161s0009.1.p |